PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang03g06020.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 68aa    MW: 8063.17 Da    PI: 10.3564
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang03g06020.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.79e-131464255
                    HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                    r+  + +Er RR++++  f +L +l+P++   +sk +s  + +e+A++YIk+Lq
  Vang03g06020.1 14 RVDRKFIERDRRNQMKALFRRLNSLVPHQ---TSKAVSLPDQVEEATNYIKKLQ 64
                    5666789**********************...99*******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.1091263IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.59E-111365IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.89E-51464No hitNo description
Gene3DG3DSA:4.10.280.102.2E-101466IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.0E-91764IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 68 aa     Download sequence    Send to blast
MNNTDMENNP SPSRVDRKFI ERDRRNQMKA LFRRLNSLVP HQTSKAVSLP DQVEEATNYI  60
KKLQMNME
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150381e-69AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014518226.14e-33PREDICTED: uncharacterized protein LOC106775593
TrEMBLA0A0S3S2S93e-43A0A0S3S2S9_PHAAN; Uncharacterized protein
STRINGGLYMA13G31211.12e-30(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9063498
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.11e-17bHLH family protein